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Arnaud Droit

Professeur titulaire

Arnaud Droit
Centre de recherche sur le cancer
Centre de recherche en données massives
Centre de recherche du CHU de Québec - Université Laval
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Contribution à la recherche

Axe de recherche de l'Université Laval :

Santé et bien-être durables

Thématiques de recherche de la Faculté de médecine :

Bioinformatique / données massives (big data)

Domaines et intérêts de recherche du (de la) professeur(e) :

Cancer
  • Cancer du sein
  • Cancer la prostate
  • Environnement et cancer
  • Lymphomes
  • Nutrition et cancer
  • Diagnostic et détection du cancer
Neurosciences, santé mentale et toxicomanies
  • Génétique des maladies neurologiques et psychiatriques
  • Maladies neurodégénératives
  • Migraine
  • Autisme

Projets de recherche

  • L’AIMZ-938, un nouveau promédicament anticancéreux pour le traitement des cancers du sein humain réfractaires aux traitements actuels et exprimant le cytochrome P450 1A1 - Instituts de recherche en santé du Canada - Subvention Projet, co-chercheur - 2021-10-01 au 2026-09-30
  • Chaire de recherche et d'innovation l'Oréal en biologie numérique - L'Oréal - Chaires de recherche sans organismes subventionnaires, chercheur principal - 2016-05-16 au 2026-05-15
  • Therapeutic approach to preserve Tfh cells and improve B cell immunity in simian immunodeficiency virus infected rhesus macaques - Instituts de recherche en santé du Canada - Subvention Projet, co-chercheur - 2021-04-01 au 2026-03-31
  • Outil d'intelligence artificielle pour l'identification rapide et précise des micro-organismes dans le lait - Ministère de l'agriculture, des pêcheries et de l'alimentation - Innov'Action volet 1, chercheur principal - 2022-03-24 au 2025-04-30
  • Delineation of the epigenomic principles underlying microglial transcriptional and cellular activity in chronic neurodegenerative diseases - Instituts de recherche en santé du Canada - Subvention Projet, co-chercheur - 2020-03-01 au 2025-03-31
  • Nouvelle approche intégrative de génomique du microbiome pour des luzernières plus durables - Génome Québec - Programme d’intégration de la génomique, chercheur principal - 2022-05-01 au 2024-04-30
  • Outil d'intelligence artificielle pour l'identification rapide et précise des bactéries pathogènes chez les animaux et/ou chez l'humain dans le lait et les produits laitiers - Fonds de recherche du Québec - Nature et technologies - Projet de recherche en équipe, chercheur principal - 2021-04-01 au 2024-03-31
  • Observatoire international sur les impacts sociétaux de l'intelligence artificielle et du numérique - Fonds de recherche du Québec - Société et culture, Université Laval - Fonds internes - Appel à propositions : création d’un Observatoire international sur les impacts sociétaux de l’intelligence artificielle et du numérique, co-chercheur - 2018-04-01 au 2024-03-31
  • Caractérisation de la structure 3D et de la coloration des perles chez Pinctada sp. par analyse d’image. - Institut français de recherche pour l'exploitation de la mer, chercheur principal - 2021-01-01 au 2023-12-31
  • Caribou Genomics : a National Non-Invasive Monitoring Approach for an Iconic and Model Species-at-Risk - Environnement Canada et Changement Climatique, Génome Canada - Programme de partenariats pour les applications de la génomique (PPAG), Trent University, co-chercheur - 2020-10-01 au 2023-09-30
  • Utilisation du séquençage à haut débit pour l’identification d’organismes pathogènes des plantes - Ministère de l'agriculture, des pêcheries et de l'alimentation - Prime-Vert : Programme de soutien financier, Institut de recherche et de développement en agroenvironnement, co-chercheur - 2019-08-01 au 2023-08-31
  • Nouvelle approche moléculaire pour la détection simultanée des virus pathogènes aux framboisiers et aux fraisiers - Ministère de l'agriculture, des pêcheries et de l'alimentation - Prime-Vert : Programme de soutien financier, Institut de recherche et de développement en agroenvironnement, co-chercheur - 2019-08-01 au 2023-08-31
  • Development of high accuracy models for MICROB-AI, a new generation of diagnosis test for UTI - Génome Québec - Programme d’intégration de la génomique, chercheur principal - 2021-04-01 au 2023-06-30
  • Cellular mechanisms regulating the pathogenesis of secondary progressive CNS autoimmunity - Instituts de recherche en santé du Canada - Subvention Projet, co-chercheur - 2018-10-01 au 2023-03-31
  • Identifying novel molecular insights from life science massive data - Conseil de recherches en sciences naturelles et génie Canada, Secrétariat Inter-Conseils (Canada) (CRSH, CRSNG, IRSC) - Subventions à la découverte SD (individuelles et d'équipe), chercheur principal - 2018-04-01 au 2023-03-31
  • Leveraging the impact of diversity in neurodevelopmental disability by integrating machine learning in personalized interventions - Instituts de recherche en santé du Canada - Canada-UK Artificial Intelligence Initiative, University of Alberta, co-chercheur - 2020-02-01 au 2023-01-31
  • Predict to prevent: Advanced proteomics profiling for precision medicine - Fondation Canadienne pour l'innovation (La), Ministère de la Santé et des Services sociaux - Fonds des leaders John-R.-Evans (FLJR), chercheur principal - 2021-03-23 au 2022-09-30
  • Influence of hyperglycemia on the host-microbiome interactions during subgingival microbiome dysbiosis - Biocodex Microbiota Foundation - National Call for projects – Canada, co-chercheur - 2020-12-11 au 2022-06-10
  • Covid-19 effects on ARTErial StIffness and vascular AgiNg (CARTESIAN) study- Canada - Instituts de recherche en santé du Canada - Subvention de fonctionnement : Possibilité de financement sur les nouveaux besoins prioritaires en recherche sur la COVID-19, co-chercheur - 2021-06-01 au 2022-05-31
  • Prevention of the immunopathology induced by SARS-CoV-2 - Instituts de recherche en santé du Canada - Subvention de fonctionnement : Possibilité de financement sur les nouveaux besoins prioritaires en recherche sur la COVID-19, co-chercheur - 2021-06-01 au 2022-05-31
  • Computer-Aided Sperm Analysis (CASA) of sperm motility and hyperactivation - Conseil de recherches en sciences naturelles et génie Canada - Subventions d'outils et d'instruments de recherche (OIR), co-chercheur - 2021-04-01 au 2022-03-31
  • Dévelooppement d'algorithmes d'interprétation de modèles d'apprentissage profond pour la découverte de biomarqueurs - Fonds France Canada pour la recherche - Nouvelles collaborations de recherche, chercheur principal - 2020-04-01 au 2022-03-31
  • Use of genomics to manage and protect caribou populations - Managium, Génome Québec - Programme de partenariats pour les applications de la génomique (PPAG), co-chercheur - 2018-04-01 au 2022-03-31
  • Personalized Risk Assesment for Prevention and Early Detection of Breast Cancer : Integration and Implementation (PERSPECTIVE II) - Regroupement de compagnies et corporations canadiennes, Fondation du CHU de Québec, Génome Québec, Ministère de la santé (Ontario), Ministère de l'Économie, de la Science et de l'Innovation, Instituts de recherche en santé du Canada, Fondation du cancer du sein du Québec, Génome Canada - Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project, co-chercheur - 2017-11-01 au 2022-03-31
  • Development of Comprehensive Cytogenomics and Molecular Genetics Testing Using ans Exome and Low-Pass Whole Genome Sequencing Combined Approach - Génome Québec, Génome Canada - Projets de recherche appliquée à grande échelle - Large-Scale Applied Research Project, co-chercheur - 2019-01-01 au 2021-12-31
  • Impact of the sperm epigenome on the progeny outcome born by assisted reproductive technology - Sick Kids Foundation (The) - New Investigator Research Grants, co-chercheur - 2016-07-01 au 2021-12-31
  • Une infrastructure IA multi-usagers clé en main pour gérer le cycle de vie complet des données en santé - Université Laval - Fonds internes - BDR - Cas spéciaux et obligations institutionnelles, co-chercheur - 2021-04-01 au 2021-11-30
  • Développement d'approches par apprentissage actif et en budget contraint à partir de données de cardiologie - MITACS Inc. - Bourse de recherche Mitacs Globalink, chercheur principal - 2021-08-01 au 2021-10-29
  • Live viral spectroscopy for rapid Covid-19 detection applied directly to clinical biofluids without sample processing - Conseil de recherches en sciences naturelles et génie Canada - Subventions Alliance du CRSNG relatives à la COVID-19, co-chercheur - 2020-08-01 au 2021-07-31
  • Mise en place d’une application web d’aide à la visualisation et à l’interprétation des analyses de la qualité des sols en culture de pommes de terre - Ministère de l'agriculture, des pêcheries et de l'alimentation, Consortium de recherche sur la pomme de terre du Québec - Programme Innov’Action agroalimentaire, Institut de recherche et de développement en agroenvironnement, co-chercheur - 2019-05-17 au 2021-05-16
  • Développement d'un nouvel instrument d'analyse en temps réel pour la chirurgie guidée des cancers - Fonds de recherche du Québec - Nature et technologies - Programme Samuel-De Champlain, chercheur principal - 2019-04-01 au 2021-03-31
  • Calcul Québec - Fonds de recherche du Québec - Nature et technologies, Université Laval - Fonds internes - Regroupements stratégiques NT, Université de Montréal, co-chercheur - 2015-04-01 au 2021-03-31
  • Father's lasting influence: Molecular foundations of intergenerational transmission of the paternal environment - Instituts de recherche en santé du Canada - Subvention d'équipe : La santé des garçons et des hommes, co-chercheur - 2014-11-01 au 2021-03-31
  • Toward nutritional and epigenomic interventions in prostate cancer prevention and management - Instituts de recherche en santé du Canada - Fonctionnement: Subvention de promotion de l’impact - CCREES, co-chercheur - 2017-10-01 au 2020-09-30

Publications

  • New Developments and Possibilities in Reanalysis and Reinterpretation of Whole Exome Sequencing Datasets for Unsolved Rare Diseases Using Machine Learning Approaches, Samarth Thonta Setty, Marie-Pier Scott-Boyer, Tania Cuppens, Arnaud Droit, International Journal of Molecular Sciences, 2022, 10.3390/ijms23126792
  • Cis-regulatory hubs: a new 3D model of complex disease genetics with an application to schizophrenia, Loïc Mangnier, Charles Joly-Beauparlant, Arnaud Droit, Steve Bilodeau, Alexandre Bureau, Life Science Alliance, 2022, 10.26508/lsa.202101156
  • DIA proteomics data from a UPS1-spiked E.coli protein mixture processed with six software tools, Clarisse Gotti, Florence Roux-Dalvai, Charles Joly-Beauparlant, Loïc Mangnier, Mickaël Leclercq, Arnaud Droit, Data in Brief, 2022, 10.1016/j.dib.2022.107829
  • Interpretation of network-based integration from multi-omics longitudinal data, Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Perin, Kim-Anh Lê Cao, Arnaud Droit, Nucleic Acids Research, 2022, 10.1093/nar/gkab1200
  • CNVs with adaptive potential in Rangifer tarandus: genome architecture and new annotated assembly, Julien Prunier, Alexandra Carrier, Isabelle Gilbert, William Poisson, Vicky Albert, Joëlle Taillon, Vincent Bourret, Steeve D Côté, Arnaud Droit, Claude Robert, Life Science Alliance, 2022, 10.26508/lsa.202101207
  • timeOmics: an R package for longitudinal multi-omics data integration, Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Perin, Kim-Anh Lê Cao, Arnaud Droit, Bioinformatics, 2022, 10.1093/bioinformatics/btab664
  • Vitamin C Differentially Impacts the Serum Proteome Profile in Female and Male Mice, Lucie Aumailley, Sylvie Bourassa, Clarisse Gotti, Arnaud Droit, Michel Lebel, Journal of Proteome Research, 2021, 10.1021/acs.jproteome.1c00542
  • Proteomic Analysis of Maternal Urine for the Early Detection of Preeclampsia and Fetal Growth Restriction, Emmanuel Bujold, Alexandre Fillion, Florence Roux-Dalvai, Marie Pier Scott-Boyer, Yves Giguère, Jean-Claude Forest, Clarisse Gotti, Geneviève Laforest, Paul Guerby, Arnaud Droit, Journal of Clinical Medicine, 2021, 10.3390/jcm10204679
  • Extensive and Accurate Benchmarking of DIA Acquisition Methods and Software Tools Using a Complex Proteomic Standard, Clarisse Gotti, Florence Roux-Dalvai, Charles Joly-Beauparlant, Loïc Mangnier, Mickaël Leclercq, Arnaud Droit, Journal of Proteome Research, 2021, 10.1021/acs.jproteome.1c00490
  • KibioR & Kibio: a new architecture for next-generation data querying and sharing in big biology, Régis Ongaro-Carcy, Marie-Pier Scott-Boyer, Adrien Dessemond, François Belleau, Mickael Leclercq, Olivier Périn, Arnaud Droit, Bioinformatics, 2021, 10.1093/bioinformatics/btab157
  • Personalized Risk Assessment for Prevention and Early Detection of Breast Cancer: Integration and Implementation (PERSPECTIVE I&I), Jennifer Brooks, Hermann Nabi, Irene Andrulis, Antonis Antoniou, Jocelyne Chiquette, Philippe Després, Peter Devilee, Michel Dorval, Arnaud Droit, Douglas Easton, Andrea Eisen, Laurence Eloy, Samantha Fienberg, David Goldgar, Eric Hahnen, Yann Joly, Bartha Knoppers, Aisha Lofters, Jean-Yves Masson, Nicole Mittmann, Jean-Sébastien Paquette, Nora Pashayan, Rita Schmutzler, Tracy Stockley, Sean Tavtigian, Meghan Walker, Michael Wolfson, Anna Chiarelli, Jacques Simard, Journal of Personalized Medicine, 2021, 10.3390/jpm11060511
  • Early-Life Exposure to Environmental Contaminants Perturbs the Sperm Epigenome and Induces Negative Pregnancy Outcomes for Three Generations via the Paternal Lineage, Maurice Clotilde, Mathieu Dalvai, Romain Lambrot, Astrid Deschênes, Marie-Pier Scott-Boyer, Serge McGraw, Donovan Chan, Nancy Côté, Ayelet Ziv-Gal, Jodi Flaws, Arnaud Droit, Jacquetta Trasler, Sarah Kimmins, Janice Bailey, Epigenomes, 2021, 10.3390/epigenomes5020010
  • Modulating HSF1 levels impacts expression of the estrogen receptor α and antiestrogen response, Maruhen AD Silveira, Christophe Tav, Félix-Antoine Bérube-Simard, Tania Cuppens, Mickaël Leclercq, Éric Fournier, Maxime C Côté, Arnaud Droit, Steve Bilodeau, Life Science Alliance, 2021, 10.26508/lsa.202000811
  • ETumorMetastasis: A Network-based Algorithm Predicts Clinical Outcomes Using Whole-exome Sequencing Data of Cancer Patients, Jean-Sébastien Milanese, Chabane Tibiche, Naif Zaman, Jinfeng Zou, Pengyong Han, Zhigang Meng, Andre Nantel, Arnaud Droit, Edwin Wang, Genomics, Proteomics & Bioinformatics, 2021, 10.1016/j.gpb.2020.06.009
  • Dairy product intake modifies gut microbiota composition among hyperinsulinemic individuals, Khorraminezhad, L., Leclercq, M., O’Connor, S., Julien, P., Weisnagel, S.J., Gagnon, C., Droit, A., Rudkowska, I., European Journal of Nutrition, 2021, 10.1007/s00394-020-02226-z
  • Interactions with plant pathogens influence lipopeptides production and antimicrobial activity of Bacillus subtilis strain PTB185, Cossus, L., Roux-Dalvai, F., Kelly, I., Nguyen, T.T.A., Antoun, H., Droit, A., Tweddell, R.J., Biological Control, 2021, 10.1016/j.biocontrol.2020.104497
  • Extensive and accurate benchmarking of DIA acquisition methods and software tools using a complex proteomic standard, , 2020, 10.1101/2020.11.03.365585
  • Interpretation of network-based integration from multi-omics longitudinal data, , 2020, 10.1101/2020.11.02.365593
  • LY75 Ablation Mediates Mesenchymal-Epithelial Transition (MET) in Epithelial Ovarian Cancer (EOC) Cells Associated with DNA Methylation Alterations and Suppression of the Wnt/β-Catenin Pathway, Sadia Mehdi, Magdalena Bachvarova, Marie-Pier Scott-Boyer, Arnaud Droit, Dimcho Bachvarov, International Journal of Molecular Sciences, 2020, 10.3390/ijms21051848
  • Adipose Tissue Transcriptome Is Related to Pollutant Exposure in Polar Bear Mother-Cub Pairs from Svalbard, Norway, Herst, P.M., Aars, J., Joly Beauparlant, C., Bodein, A., Dalvai, M., Gagné, D., Droit, A., Bailey, J.L., Routti, H., Environmental Science and Technology, 2020, 10.1021/acs.est.0c01920
  • Alternative promoters control UGT2B17-dependent androgen catabolism in prostate cancer and its influence on progression, Lévesque, E., Labriet, A., Hovington, H., Allain, É.P., Melo-Garcia, L., Rouleau, M., Brisson, H., Turcotte, V., Caron, P., Villeneuve, L., Leclercq, M., Droit, A., Audet-Walsh, E., Simonyan, D., Fradet, Y., Lacombe, L., Guillemette, C., British Journal of Cancer, 2020, 10.1038/s41416-020-0749-2
  • Complexity of the microRNA transcriptome of cow milk and milk-derived extracellular vesicles isolated via differential ultracentrifugation, Benmoussa, A., Laugier, J., Beauparlant, C.J., Lambert, M., Droit, A., Provost, P., Journal of Dairy Science, 2020, 10.3168/jds.2019-16880
  • Cumulative learning enables convolutional neural network representations for small mass spectrometry data classification, , Nature Communication, 2020, 10.1038/s41467-020-19354-z
  • DSNetwork: An Integrative Approach to Visualize Predictions of Variants’ Deleteriousness, Lemaçon, A., Scott-Boyer, M.-P., Ongaro-Carcy, R., Soucy, P., Simard, J., Droit, A., Frontiers in Genetics, 2020, 10.3389/fgene.2019.01349
  • FcgRIIA expression accelerates nephritis and increases platelet activation in systemic lupus erythematosus, Melki, I., Allaeys, I., Tessandier, N., Mailhot, B., Cloutier, N., Campbell, R.A., Rowley, J.W., Salem, D., Zufferey, A., Laroche, A., Lévesque, T., Patey, N., Rauch, J., Lood, C., Droit, A., McKenzie, S.E., Machlus, K.R., Rondina, M.T., Lacroix, S., Fortin, P.R., Boilard, E., Blood, 2020, 10.1182/blood.2020004974
  • Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes, Fachal, L., Aschard, H., Beesley, J., Barnes, D.R., Allen, J., Kar, S., Pooley, K.A., Dennis, J., Michailidou, K., Turman, C., Soucy, P., Lemaçon, A., Lush, M., Tyrer, J.P., Ghoussaini, M., Marjaneh, M.M., Jiang, X., Agata, S., Aittomäki, K., Alonso, M.R., Andrulis, I.L., Anton-Culver, H., Antonenkova, N.N., Arason, A., Arndt, V., Aronson, K.J., Arun, B.K., Auber, B., Auer, P.L., Azzollini, J., Balmaña, J., Barkardottir, R.B., Barrowdale, D., Beeghly-Fadiel, A., Benitez, J., Bermisheva, M., Bialkowska, K., Blanco, A.M., Blomqvist, C., Blot, W., Bogdanova, N.V., Bojesen, S.E., Bolla, M.K., Bonanni, B., Borg, A., Bosse, K., Brauch, H., Brenner, H., Briceno, I., Brock, I.W., Brooks-Wilson, A., Brüning, T., Burwinkel, B., Buys, S.S., Cai, Q., Caldés, T., Caligo, M.A., Camp, N.J., Campbell, I., Canzian, F., Carroll, J.S., Carter, B.D., Castelao, J.E., Chiquette, J., Christiansen, H., Chung, W.K., Claes, K.B.M., Clarke, C.L., Mari, V., Berthet, P., Castera, L., Vaur, D., Lallaoui, H., Bignon, Y.-J., Uhrhammer, N., Bonadona, V., Lasset, C., Révillion, F., Vennin, P., Muller, D., Gomes, D.M., Ingster, O., Coupier, I., Pujol, P., Collonge-Rame, M.-A., Mortemousque, I., Bera, O., Rose, M., Baurand, A., Bertolone, G., Faivre, L., Dreyfus, H., Leroux, D., Venat-Bouvet, L., Bézieau, S., Delnatte, C., Chiesa, J., Gilbert-Dussardier, B., Gesta, P., Prieur, F.P., Bronner, M., Sokolowska, J., Coulet, F., Boutry-Kryza, N., Calender, A., Giraud, S., Leone, M., Fert-Ferrer, S., Stoppa-Lyonnet, D., Jiao, Y., Lesueur, F.L., Mebirouk, N., Barouk-Simonet, E., Bubien, V., Longy, M., Sevenet, N., Gladieff, L., Toulas, C., Reimineras, A., Sobol, H., Paillerets, B.B.-D., Cabaret, O., Caron, O., Guillaud-Bataille, M., Rouleau, E., Belotti, M., Buecher, B., Caputo, S., Colas, C., Pauw, A.D., Fourme, E., Gauthier-Villars, M., Golmard, L., Moncoutier, V., Saule, C., Donaldson, A., Murray, A., Brady, A., Brewer, C., Pottinger, C., Miller, C., Gallagher, D., Gregory, H., Cook, J., Eason, J., Adlard, J., Barwell, J., Ong, K.-R., Snape, K., Walker, L., Izatt, L., Side, L., Tischkowitz, M., Rogers, M.T., Porteous, M.E., Ahmed, M., Morrison, P.J., Brennan, P., Eeles, R., Davidson, R., Collée, J.M., Cornelissen, S., Couch, F.J., Cox, A., Cross, S.S., Cybulski, C., Czene, K., Daly, M.B., de la Hoya, M., Devilee, P., Diez, O., Ding, Y.C., Dite, G.S., Domchek, S.M., Dörk, T., dos-Santos-Silva, I., Droit, A., Dubois, S., Dumont, M., Duran, M., Durcan, L., Dwek, M., Eccles, D.M., Engel, C., Eriksson, M., Evans, D.G., Fasching, P.A., Fletcher, O., Floris, G., Flyger, H., Foretova, L., Foulkes, W.D., Friedman, E., Fritschi, L., Frost, D., Gabrielson, M., Gago-Dominguez, M., Gambino, G., Ganz, P.A., Gapstur, S.M., Garber, J., García-Sáenz, J.A., Gaudet, M.M., Georgoulias, V., Giles, G.G., Glendon, G., Godwin, A.K., Goldberg, M.S., Goldgar, D.E., González-Neira, A., Tibiletti, M.G., Greene, M.H., Grip, M., Gronwald, J., Grundy, A., Guénel, P., Hahnen, E., Haiman, C.A., Håkansson, N., Hall, P., Hamann, U., Harrington, P.A., Hartikainen, J.M., Hartman, M., He, W., Healey, C.S., Heemskerk-Gerritsen, B.A.M., Heyworth, J., Hillemanns, P., Hogervorst, F.B.L., Hollestelle, A., Hooning, M.J., Hopper, J.L., Howell, A., Huang, G., Hulick, P.J., Imyanitov, E.N., Sexton, A., Christian, A., Trainer, A., Spigelman, A., Fellows, A., Shelling, A., Fazio, A.D., Blackburn, A., Crook, A., Meiser, B., Patterson, B., Clarke, C., Saunders, C., Hunt, C., Scott, C., Amor, D., Marsh, D., Edkins, E., Salisbury, E., Haan, E., Neidermayr, E., Macrea, F., Farshid, G., Lindeman, G., Trench, G., Mann, G., Gill, G., Thorne, H., Hickie, I., Winship, I., Flanagan, J., Kollias, J., Visvader, J., Stone, J., Burke, J., Saunus, J., Forbes, J., Kirk, J., French, J., Tucker, K., Wu, K., Phillips, K., Lipton, L., Andrews, L., Lobb, L., Kentwell, M., Spurdle, M., Cummings, M., Gleeson, M., Harris, M., Jenkins, M., Young, M.A., Delatycki, M., Wallis, M., Burgess, M., Price, M., Brown, M., Southey, M.C., Bogwitz, M., Field, M., Friedlander, M., Gattas, M., Saleh, M., Hayward, N., Pachter, N., Cohen, P., Duijf, P., James, P., Simpson, P., Fong, P., Butow, P., Williams, R., Kefford, R., Scott, R., Milne, R., Balleine, R., Dawson, S.–J., Lok, S., O’Connell, S., Greening, S., Nightingale, S., Edwards, S.L., Fox, S., McLachlan, S.-A., Lakhani, S., Antill, Y., Aalfs, C., Meijers-Heijboer, H., van Engelen, K., Gille, H., Boere, I., Collée, M., van Deurzen, C., Obdeijn, I.-M., van den Ouweland, A., Seynaeve, C.M., Siesling, S., Verloop, J., van Asperen, C.J., van Cronenburg, T., Blok, R., de Boer, M., Garcia, E.G., Adank, M., Hogervorst, F., Jenner, D., van Leeuwen, F., Rookus, M., Russell, N., Schmidt, M., van den Belt-Dusebout, S., Kets, C., Mensenkamp, A., de Bock, T., van der Hout, A., Mourits, M., Oosterwijk, J., Ausems, M., Koudijs, M., Baxter, R., Yip, D., Carpenter, J., Davis, A., Pathmanathan, N., Graham, D., Sachchithananthan, M., Isaacs, C., Iwasaki, M., Jager, A., Jakimovska, M., Jakubowska, A., James, P.A., Janavicius, R., Jankowitz, R.C., John, E.M., Johnson, N., Jones, M.E., Jukkola-Vuorinen, A., Jung, A., Kaaks, R., Kang, D., Kapoor, P.M., Karlan, B.Y., Keeman, R., Kerin, M.J., Khusnutdinova, E., Kiiski, J.I., Kirk, J., Kitahara, C.M., Ko, Y.-D., Konstantopoulou, I., Kosma, V.-M., Koutros, S., Kubelka-Sabit, K., Kwong, A., Kyriacou, K., Laitman, Y., Lambrechts, D., Lee, E., Leslie, G., Lester, J., Lesueur, F., Lindblom, A., Lo, W.-Y., Long, J., Lophatananon, A., Loud, J.T., Lubinski, J., MacInnis, R.J., Maishman, T., Makalic, E., Mannermaa, A., Manoochehri, M., Manoukian, S., Margolin, S., Martinez, M.E., Matsuo, K., Maurer, T., Mavroudis, D., Mayes, R., McGuffog, L., McLean, C., Meindl, A., Miller, A., Miller, N., Montagna, M., Moreno, F., Muir, K., Mulligan, A.M., Muñoz-Garzon, V.M., Muranen, T.A., Narod, S.A., Nassir, R., Nathanson, K.L., Neuhausen, S.L., Nevanlinna, H., Neven, 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Thomassen, M., Thull, D.L., Toland, A.E., Tollenaar, R.A.E.M., Tomlinson, I., Torres, D., Torres-Mejía, G., Troester, M.A., Truong, T., Tung, N., Tzardi, M., Ulmer, H.-U., Vachon, C.M., van der Kolk, L.E., van Rensburg, E.J., Vega, A., Viel, A., Vijai, J., Vogel, M.J., Wang, Q., Wappenschmidt, B., Weinberg, C.R., Weitzel, J.N., Wendt, C., Wildiers, H., Winqvist, R., Wolk, A., Wu, A.H., Yannoukakos, D., Zhang, Y., Zheng, W., Hunter, D., Pharoah, P.D.P., Chang-Claude, J., García-Closas, M., Schmidt, M.K., Milne, R.L., Kristensen, V.N., French, J.D., Antoniou, A.C., Chenevix-Trench, G., Simard, J., Easton, D.F., Dunning, A.M., Nature Genetics, 2020, 10.1038/s41588-019-0537-1
  • Glutamine supplementation improves the efficacy of miltefosine treatment for visceral leishmaniasis, Ferreira, C., Mesquita, I., Barbosa, A.M., Osório, N.S., Torrado, E., Beauparlant, C.-J., Droit, A., Cunha, C., Carvalho, A., Saha, B., Estaquier, J., Silvestre, R., PLoS Neglected Tropical Diseases, 2020, 10.1371/journal.pntd.0008125
  • Hedgehog signaling pathway regulates gene expression profile of epididymal principal cells through the primary cilium, Girardet, L., Bernet, A., Calvo, E., Soulet, D., Joly-Beauparlant, C., Droit, A., Cyr, D.G., Belleannée, C., FASEB Journal, 2020, 10.1096/fj.202000328R
  • Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer, Vittrant, B., Leclercq, M., Martin-Magniette, M.-L., Collins, C., Bergeron, A., Fradet, Y., Droit, A., Frontiers in Genetics, 2020, 10.3389/fgene.2020.550894
  • Identification of the most important features of knee osteoarthritis structural progressors using machine learning methods, Jamshidi, A., Leclercq, M., Labbe, A., Pelletier, J.-P., Abram, F., Droit, A., Martel-Pelletier, J., Therapeutic Advances in Musculoskeletal Disease, 2020, 10.1177/1759720X20933468
  • Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression, Vittrant, B., Bergeron, A., Molina, O.E., Leclercq, M., Légaré, X.-P., Hovington, H., Picard, V., Martin-Magniette, M.-L., Livingstone, J., Boutros, P.C., Collins, C., Fradet, Y., Droit, A., OncoImmunology, 2020, 10.1080/2162402X.2020.1851950
  • Neuronal interleukin-1 receptors mediate pain in chronic inflammatory diseases, Mailhot, B., Christin, M., Tessandier, N., Sotoudeh, C., Bretheau, F., Turmel, R., Pellerin, E., Wang, F., Bories, C., Joly-Beauparlant, C., De Koninck, Y., Droit, A., Cicchetti, F., Scherrer, G., Boilard, E., Sharif-Naeini, R., Lacroix, S., Journal of Experimental Medicine, 2020, 10.1084/jem.20191430
  • Statistical and machine-learning analyses in nutritional genomics studies, Khorraminezhad, L., Leclercq, M., Droit, A., Bilodeau, J.-F., Rudkowska, I., Nutrients, 2020, 10.3390/nu12103140
  • The Absence of HIF-1α Increases Susceptibility to Leishmania donovani Infection via Activation of BNIP3/mTOR/SREBP-1c Axis, Mesquita, I., Ferreira, C., Moreira, D., Kluck, G.E.G., Barbosa, A.M., Torrado, E., Dinis-Oliveira, R.J., Gonçalves, L.G., Beauparlant, C.-J., Droit, A., Berod, L., Sparwasser, T., Bodhale, N., Saha, B., Rodrigues, F., Cunha, C., Carvalho, A., Castro, A.G., Estaquier, J., Silvestre, R., Cell Reports, 2020, 10.1016/j.celrep.2020.02.098
  • UGT2B17 modifies drug response in chronic lymphocytic leukaemia, Allain, E.P., Rouleau, M., Vanura, K., Tremblay, S., Vaillancourt, J., Bat, V., Caron, P., Villeneuve, L., Labriet, A., Turcotte, V., Le, T., Shehata, M., Schnabl, S., Demirtas, D., Hubmann, R., Joly-Beauparlant, C., Droit, A., Jäger, U., Staber, P.B., Lévesque, E., Guillemette, C., British Journal of Cancer, 2020, 10.1038/s41416-020-0887-6
  • A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types, Bodein, A., Chapleur, O., Droit, A., Lê Cao, K.-A., Frontiers in Genetics, 2019, 10.3389/fgene.2019.00963
  • Deletion of the MIZ-1 POZ domain increases efficacy of cytarabine treatment in T- And B-ALL/lymphoma mouse models, Ross, J., Rashkovan, M., Fraszczak, J., Joly-Beauparlant, C., Vadnais, C., Winkler, R., Droit, A., Kosan, C., Moroy, T., Cancer Research, 2019, 10.1158/0008-5472.CAN-18-3038
  • Fast and accurate bacterial species identification in urine specimens using LC-MS/MS mass spectrometry and machine learning, Roux-Dalvai, F., Gotti, C., Leclercq, M., Hélie, M.-C., Boissinot, M., Arrey, T.N., Dauly, C., Fournier, F., Kelly, I., Marcoux, J., Bestman-Smith, J., Bergeron, M.G., Droit, A., Molecular and Cellular Proteomics, 2019, 10.1074/mcp.TIR119.001559
  • Folic acid supplementation reduces multigenerational sperm miRNA perturbation induced by in utero environmental contaminant exposure, , Environmental Epigenetics, 2019, 10.1093/eep/dvz024
  • Increased Dairy Product Intake Alters Serum Metabolite Profiles in Subjects at Risk of Developing Type 2 Diabetes, O'Connor, S., Greffard, K., Leclercq, M., Julien, P., Weisnagel, S.J., Gagnon, C., Droit, A., Bilodeau, J.-F., Rudkowska, I., Molecular Nutrition and Food Research, 2019, 10.1002/mnfr.201900126
  • Large-scale automatic feature selection for biomarker discovery in high-dimensional omics data, Leclercq, M., Vittrant, B., Martin-Magniette, M.L., Scott Boyer, M.P., Perin, O., Bergeron, A., Fradet, Y., Droit, A., Frontiers in Genetics, 2019, 10.3389/fgene.2019.00452
  • LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes, Prunier, J., Lemaçon, A., Bastien, A., Jafarikia, M., Porth, I., Robert, C., Droit, A., Frontiers in Genetics, 2019, 10.3389/fgene.2019.01192
  • Portrait of blood-derived extracellular vesicles in patients with Parkinson's disease, Lamontagne-Proulx, J., St-Amour, I., Labib, R., Pilon, J., Denis, H.L., Cloutier, N., Roux-Dalvai, F., Vincent, A.T., Mason, S.L., Williams-Gray, C., Duchez, A.-C., Droit, A., Lacroix, S., Dupré, N., Langlois, M., Chouinard, S., Panisset, M., Barker, R.A., Boilard, E., Cicchetti, F., Neurobiology of Disease, 2019, 10.1016/j.nbd.2018.11.002
  • Prenatal Exposure to Environmentally-Relevant Contaminants Perturbs Male Reproductive Parameters Across Multiple Generations that are Partially Protected by Folic Acid Supplementation, Lessard, M., Herst, P.M., Charest, P.L., Navarro, P., Joly-Beauparlant, C., Droit, A., Kimmins, S., Trasler, J., Benoit-Biancamano, M.-O., MacFarlane, A.J., Dalvai, M., Bailey, J.L., Scientific Reports, 2019, 10.1038/s41598-019-50060-z
  • RNA sequencing data of human prostate cancer cells treated with androgens, Poluri, R.T.K., Beauparlant, C.J., Droit, A., Audet-Walsh, É., Data in Brief, 2019, 10.1016/j.dib.2019.104372
  • The Ovulatory Signal Precipitates LRH-1 Transcriptional Switching Mediated by Differential Chromatin Accessibility, Bianco, S., Bellefleur, A.-M., Beaulieu, É., Beauparlant, C.J., Bertolin, K., Droit, A., Schoonjans, K., Murphy, B.D., Gévry, N., Cell Reports, 2019, 10.1016/j.celrep.2019.07.088
  • Transcriptomic profile of the subiculum-projecting VIP GABAergic neurons in the mouse CA1 hippocampus, Luo, X., Muñoz-Pino, E., Francavilla, R., Vallée, M., Droit, A., Topolnik, L., Brain Structure and Function, 2019, 10.1007/s00429-019-01883-z
  • A type 2 diabetes disease module with a high collective influence for Cdk2 and PTPLAD1 is localized in endosomes, Boutchueng-Djidjou, M., Belleau, P., Bilodeau, N., Fortier, S., Bourassa, S., Droit, A., Elowe, S., Faure, R.L., PLoS ONE, 2018, 10.1371/journal.pone.0205180
  • Erratum: Inferring and modeling inheritance of differentially methylated changes across multiple generations (Nucleic acids research (2018) 46 14 (e85)), Belleau, P., Deschênes, A., Scott-Boyer, M.-P., Lambrot, R., Dalvai, M., Kimmins, S., Bailey, J., Droit, A., Nucleic acids research, 2018, 10.1093/nar/gky477
  • Implementing a web-based introductory bioinformatics course for non-bioinformaticians that incorporates practical exercises, Vincent, A.T., Bourbonnais, Y., Brouard, J.-S., Deveau, H., Droit, A., Gagné, S.M., Guertin, M., Lemieux, C., Rathier, L., Charette, S.J., Lagüe, P., Biochemistry and Molecular Biology Education, 2018, 10.1002/bmb.21086
  • Inferring and modeling inheritance of differentially methylated changes across multiple generations, Belleau, P., Deschênes, A., Scott-Boyer, M.-P., Lambrot, R., Dalvai, M., Kimmins, S., Bailey, J., Droit, A., Nucleic acids research, 2018, 10.1093/nar/gky362
  • Quantitative profiling of the UGT transcriptome in human drug-metabolizing tissues, Tourancheau, A., Rouleau, M., Guauque-Olarte, S., Villeneuve, L., Gilbert, I., Droit, A., Guillemette, C., Pharmacogenomics Journal, 2018, 10.1038/tpj.2017.5
  • Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional werner syndrome (Wrn) mutant protein, Aumailley, L., Roux-Dalvai, F., Kelly, I., Droit, A., Lebel, M., PLoS ONE, 2018, 10.1371/journal.pone.0193170
  • Association analysis identifies 65 new breast cancer risk loci, Michailidou, K., Lindström, S., Dennis, J., Beesley, J., Hui, S., Kar, S., Lemaçon, A., Soucy, P., Glubb, D., Rostamianfar, A., Bolla, M.K., Wang, Q., Tyrer, J., Dicks, E., Lee, A., Wang, Z., Allen, J., Keeman, R., Eilber, U., French, J.D., Chen, X.Q., Fachal, L., McCue, K., Reed, A.E.M., Ghoussaini, M., Carroll, J.S., Jiang, X., Finucane, H., Adams, M., Adank, M.A., Ahsan, H., Aittomäki, K., Anton-Culver, H., Antonenkova, N.N., Arndt, V., Aronson, K.J., Arun, B., Auer, P.L., Bacot, F., Barrdahl, M., Baynes, C., Beckmann, M.W., Behrens, S., Benitez, J., Bermisheva, M., Bernstein, L., Blomqvist, C., Bogdanova, N.V., Bojesen, S.E., Bonanni, B., Børresen-Dale, A.-L., Brand, J.S., Brauch, H., Brennan, P., Brenner, H., Brinton, L., Broberg, P., Brock, I.W., Broeks, A., Brooks-Wilson, A., Brucker, S.Y., Brüning, T., Burwinkel, B., Butterbach, K., Cai, Q., Cai, H., Caldés, T., Canzian, F., Carracedo, A., Carter, B.D., 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  • Association of breast cancer risk in BRCA1 and BRCA2 mutation carriers with genetic variants showing differential allelic expression: identification of a modifier of breast cancer risk at locus 11q22.3, Hamdi, Y., Soucy, P., Kuchenbaeker, K.B., Pastinen, T., Droit, A., Lemaçon, A., Adlard, J., Aittomäki, K., Andrulis, I.L., Arason, A., Arnold, N., Arun, B.K., Azzollini, J., Bane, A., Barjhoux, L., Barrowdale, D., Benitez, J., Berthet, P., Blok, M.J., Bobolis, K., Bonadona, V., Bonanni, B., Bradbury, A.R., Brewer, C., Buecher, B., Buys, S.S., Caligo, M.A., Chiquette, J., Chung, W.K., Claes, K.B.M., Daly, M.B., Damiola, F., Davidson, R., De la Hoya, M., De Leeneer, K., Diez, O., Ding, Y.C., Dolcetti, R., Domchek, S.M., Dorfling, C.M., Eccles, D., Eeles, R., Einbeigi, Z., Ejlertsen, B., Engel, C., Gareth Evans, D., Feliubadalo, L., Foretova, L., Fostira, F., Foulkes, W.D., Fountzilas, G., Friedman, E., Frost, D., Ganschow, P., Ganz, P.A., Garber, J., Gayther, S.A., Gerdes, A.-M., Glendon, G., Godwin, A.K., Goldgar, D.E., Greene, M.H., Gronwald, J., Hahnen, E., Hamann, U., Hansen, T.V.O., Hart, S., Hays, J.L., Hogervorst, F.B.L., Hulick, P.J., Imyanitov, E.N., Isaacs, C., Izatt, L., Jakubowska, A., James, P., Janavicius, R., Jensen, U.B., John, E.M., Joseph, V., Just, W., Kaczmarek, K., Karlan, B.Y., Kets, C.M., Kirk, J., Kriege, M., Laitman, Y., Laurent, M., Lazaro, C., Leslie, G., Lester, J., Lesueur, F., Liljegren, A., Loman, N., Loud, J.T., Manoukian, S., Mariani, M., Mazoyer, S., McGuffog, L., Meijers-Heijboer, H.E.J., Meindl, A., Miller, A., Montagna, M., Mulligan, A.M., Nathanson, K.L., Neuhausen, S.L., Nevanlinna, H., Nussbaum, R.L., Olah, E., Olopade, O.I., Ong, K.-R., Oosterwijk, J.C., Osorio, A., Papi, L., Park, S.K., Pedersen, I.S., Peissel, B., Segura, P.P., Peterlongo, P., Phelan, C.M., Radice, P., Rantala, J., Rappaport-Fuerhauser, C., Rennert, G., Richardson, A., Robson, M., Rodriguez, G.C., Rookus, M.A., Schmutzler, R.K., Sevenet, N., Shah, P.D., Singer, C.F., Slavin, T.P., Snape, K., Sokolowska, J., Sønderstrup, I.M.H., Southey, M., Spurdle, A.B., Stadler, Z., Stoppa-Lyonnet, D., Sukiennicki, G., Sutter, C., Tan, Y., Tea, M.-K., Teixeira, M.R., Teulé, A., Teo, S.-H., Terry, M.B., Thomassen, M., Tihomirova, L., Tischkowitz, M., Tognazzo, S., Toland, A.E., Tung, N., van den Ouweland, A.M.W., van der Luijt, R.B., van Engelen, K., van Rensburg, E.J., Varon-Mateeva, R., Wappenschmidt, B., Wijnen, J.T., Rebbeck, T., Chenevix-Trench, G., Offit, K., Couch, F.J., Nord, S., Easton, D.F., Antoniou, A.C., Simard, J., Breast Cancer Research and Treatment, 2017, 10.1007/s10549-016-4018-2
  • Connected gene communities underlie transcriptional changes in cornelia de lange syndrome, Boudaoud, I., Fournier, É., Baguette, A., Vallée, M., Lamaze, F.C., Droit, A., Bilodeau, S., Genetics, 2017, 10.1534/genetics.117.202291
  • Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer, Milne, R.L., Kuchenbaecker, K.B., Michailidou, K., Beesley, J., Kar, S., Lindström, S., Hui, S., Lemaçon, A., Soucy, P., Dennis, J., Jiang, X., Rostamianfar, A., Finucane, H., Bolla, M.K., McGuffog, L., Wang, Q., Aalfs, C.M., Abctctb, I., Adams, M., Adlard, J., Agata, S., Ahmed, S., Ahsan, H., Aittom, K.A., Fares, A.E., Allen, J., Ambrosone, C.B., Amos, C.I., Andrulis, I.L., Anton-Culver, H., Antonenkova, N.N., Arndt, V., Arnold, N., Aronson, K.J., Auber, B., Auer, P.L., Ausems, M.G.M., Azzollini, J., François, B., Balma, J.N., Barile, M., Barjhoux, L., Barkardottir, R.B., Barrdahl, M., Barnes, D., Barrowdale, D., Baynes, C., Beckmann, M.W., Benitez, J., Bermisheva, M., Bernstein, L., Bignon, Y.J., Blazer, K.R., Blok, M.J., Blomqvist, C., Blot, W., Bobolis, K., Boeckx, B., Bogdanova, N.V., Bojesen, A., Bojesen, S.E., Bonanni, B., Anne-Lise, B.D., Bozsik, A., Bradbury, A.R., Brand, J.S., Brauch, H., Brenner, H., Brigitte, B.-D.P., Brewer, C., Brinton, L., Broberg, P., Angela, B.W., Brunet, J., Brüning, T., Burwinkel, B., Buys, S.S., Byun, J., Cai, Q., Cald, T.E., Caligo, M.A., Campbell, I., Canzian, F., Caron, O., Carracedo, A., Carter, B.D., Esteban, C., Castera, L., Virginie, C.M., Chan, S.B., Jenny, C.C., Chanock, S.J., Chen, X., Cheng, T.-Y.D., Chiquette, J., Christiansen, H., Claes, K.B., Clarke, C.L., Conner, T., Conroy, D.M., Cook, J., Cordina-Duverger, E., Cornelissen, S., Coupier, I., Cox, A., Cox, D.G., Cross, S.S., Cuk, K., Cunningham, J.M., Czene, K., Daly, M.B., Damiola, F., Darabi, H., Davidson, R., Leeneer, K.D.L., Devilee, P., Dicks, E., Diez, O., Ding, Y.C., Ditsch, N., Doheny, K.F., Domchek, S.M., Dorfling, C.M., Dörk, T., Dos-Santos-Silva, I., Dubois, S., Dugué, P.-A., Dumont, M., Dunning, A.M., Durcan, L., Dwek, M., Dworniczak, B., Eccles, D., Eeles, R., Ehrencrona, H., Eilber, U., Ejlertsen, B., Ekici, A.B., Eliassen, A.H., Engel, C., Eriksson, M., Fachal, L., Faivre, L., Fasching, P.A., Faust, U., Figueroa, J., Flesch-Janys, D., Fletcher, O., Flyger, H., Foulkes, W.D., Friedman, E., Fritschi, L., Frost, D., Gabrielson, M., Gaddam, P., Gammon, M.D., Ganz, P.A., Gapstur, S.M., Garber, J., Garcia-Barberan, V., Garciá-Saénz, J.A., Gaudet, M.M., Gauthier-Villars, M., Gehrig, A., Georgoulias, V., Gerdes, A.-M., Giles, G.G., Glendon, G., Godwin, A.K., Goldberg, M.S., Goldgar, D.E., González-Neira, A., Goodfellow, P., Greene, M.H., Grenaker, G.A.I., Grip, M., Gronwald, J., Grundy, A., Gschwantler, D.-K., Guénel, P., Guo, Q., Haeberle, L., Hahnen, E., Haiman, C.A., Håkansson, N., Hallberg, E., Hamann, U., Hamel, N., Hankinson, S., Hansen, T.V., Harrington, P., Hart, S.N., Hartikainen, J.M., Healey, C.S., Hein, A., Helbig, S., Henderson, A., Heyworth, J., Hicks, B., Hillemanns, P., Hodgson, S., Hogervorst, F.B., Hollestelle, A., Hooning, M.J., Hoover, B., Hopper, J.L., Hu, C., Huang, G., Hulick, P.J., Humphreys, K., Hunter, D.J., Imyanitov, E.N., Isaacs, C., Iwasaki, M., Izatt, L., Jakubowska, A., James, P., Janavicius, R., Janni, W., Jensen, U.B., John, E.M., Johnson, N., Jones, K., Jones, M., Jukkola-Vuorinen, A., Kaaks, R., Kabisch, M., Kaczmarek, K., Kang, D., Kast, K., Keeman, R., Kerin, M.J., Kets, C.M., Keupers, M.H., Khan, S., Khusnutdinova, E., Kiiski, J.I., Kim, S.-W., Knight, J.A., Konstantopoulou, I., Kosma, V.-M., Kristensen, V.N., Kruse, T.A., Kwong, A., Lænkholm, A.-V., Laitman, Y., Lalloo, F., Lambrechts, D., Landsman, K., Lasset, C., Lazaro, C., Marchand, L.L., Al-Ejeh, F., Margreet, G.M.A., Bacot, F., Børresen-Dale, A.-L., Bressac-De, B.P., Brooks-Wilson, A., Castelao, J.E., Caux-Moncoutier, V., Chang-Claude, J., McLaes, K.B., Dieter, F.J., Gschwantler-Kaulich, D., Lecarpentier, J., Lee, A., Lee, E., Won, J.L., Lee, M.H., Lejbkowicz, F., Lesueur, F., Li, J., Lilyquist, J., Lincoln, A., Lindblom, A., Lissowska, J., Lo, W.Y., Loibl, S., Long, J., Loud, J.T., Lubinski, J., Luccarini, C., Lush, M., MacInnis, R.J., Maishman, T., Makalic, E., Kostovska, I.M., Malone, K.E., Siranoush, M., Manson, J.E., Margolin, S., Martens, J.W., Martinez, M.E., Matsuo, K., Mavroudis, D., Mazoyer, S., McLean, C., Meijers-Heijboer, H., Menéndez, P., Meyer, J., Miao, H., Miller, N., Mitchell, G., Montagna, M., Muir, K., Mulligan, A.M., Mulot, C., Nadesan, S., Nathanson, K.L., Neuhausen, S.L., Nevanlinna, H., Nevelsteen, I., Niederacher, D., Nielsen, S.F., Nordestgaard, B.G., Norman, A., Nussbaum, R.L., Olah, E., Olopade, O.I., Olson, J.E., Olswold, C., Ong, K.-R., Oosterwijk, J.C., Orr, N., Osorio, A., Pankratz, V.S., Papi, L., Park-Simon, T.-W., Paulsson-Karlsson, Y., Lloyd, R., Pedersen, I.S., Peissel, B., Peixoto, A., Perez, J.I., Peterlongo, P., Peto, J., Pfeiler, G., Phelan, C.M., Pinchev, M., Plaseska-Karanfilska, D., Poppe, B., Porteous, M.E., Prentice, R., Presneau, N., Prokofieva, D., Pugh, E., Pujana, M.A., Pylkäs, K., Rack, B., Radice, P., Rahman, N., Rantala, J., Rappaport-Fuerhauser, C., Rennert, G., Rennert, H.S., Rhenius, V., Rhiem, K., Richardson, A., Rodriguez, G.C., Romero, A., Romm, J., Rookus, M.A., Rudolph, A., Ruediger, T., Saloustros, E., Sanders, J., Sandler, D.P., Sangrajrang, S., Sawyer, E.J., Schmidt, D.F., Schoemaker, M.J., Schumacher, F., Schürmann, P., Schwentner, L., Scott, C., Scott, R.J., Seal, S., Senter, L., Seynaeve, C., Shah, M., Sharma, P., Shen, C.-Y., Sheng, X., Shimelis, H., Shrubsole, M.J., Shu, X.-O., Side, L.E., Singer, C.F., Sohn, C., Southey, M.C., Spinelli, J.J., Spurdle, A.B., Stegmaier, C., Stoppa-Lyonnet, D., Sukiennicki, G., Surowy, H., Sutter, C., Swerdlow, A., Szabo, C.I., Tamimi, R.M., Tan, Y.Y., Taylor, J.A., Tejada, M.-I., Tengström, M., Teo, S.H., Terry, M.B., Tessier, D.C., Teul, A.E., Thöne, K., Thull, D.L., Tibiletti, M.G., Tihomirova, L., Tischkowitz, M., Toland, A.E., Tollenaar, R.A.M., Tomlinson, I., Tong, L., Torres, D., Tranchant, M., Truong, T., Tucker, K., Tung, N., Tyrer, J., Ulmer, H.-U., Vachon, C., Christi, V.A.J., Den Berg, D.V., Ouweland, A.M.V., Van Rensburg, E.J., Varesco, L., Varon-Mateeva, R., Vega, A., Viel, A., Vijai, J., Vincent, D., Vollenweider, J., Walker, L., Wang, Z., Wang-Gohrke, S., Wappenschmidt, B., Weinberg, C.R., Weitzel, J.N., Wendt, C., Wesseling, J., Whittemore, A.S., Wijnen, J.T., Willett, W., Winqvist, R., Wolk, A., Wu, A.H., Xia, L., Yang, X.R., Yannoukakos, D., Zaffaroni, D., Zheng, W., Zhu, B., Ziogas, A., Ziv, E., Zorn, K.K., Gago-Dominguez, M., Mannermaa, A., Olsson, H., Teixeira, M.R., Stone, J., Offit, K., Ottini, L., Park, S.K., Thomassen, M., Hall, P., Meindl, A., Schmutzler, R.K., Droit, A., Bader, G.D., Pharoah, P.D., Couch, F.J., Easton, D.F., Kraft, P., Chenevix-Trench, G., Garciá-Closas, M., Antoniou, A.C., Simard, J., Nature Genetics, 2017, 10.1038/ng.3785
  • Influence of a pre-stimulation with chronic low-dose UVB on stress response mechanisms in human skin fibroblasts, Desgarnier, M.-C.D., Fournier, F., Droit, A., Rochette, P.J., PLoS ONE, 2017, 10.1371/journal.pone.0173740
  • Specific expression of novel long non-coding RNAs in high-hyperdiploid childhood acute lymphoblastic leukemia, Lajoie, M., Drouin, S., Caron, M., St-Onge, P., Ouimet, M., Gioia, R., Lafond, M.-H., Vidal, R., Richer, C., Oualkacha, K., Droit, A., Sinnett, D., PLoS ONE, 2017, 10.1371/journal.pone.0174124
  • Transcriptional signature of lymphoblastoid cell lines of BRCA1, BRCA2 and non-BRCA1/2 high risk breast cancer families, Pouliot, M.-C., Kothari, C., Joly-Beauparlant, C., Labrie, Y., Ouellette, G., Simard, J., Droit, A., Durocher, F., Oncotarget, 2017, 10.18632/oncotarget.20219
  • Triggering of NOD2 Receptor Converts Inflammatory Ly6Chigh into Ly6Clow Monocytes with Patrolling Properties, Lessard, A.-J., LeBel, M., Egarnes, B., Préfontaine, P., Thériault, P., Droit, A., Brunet, A., Rivest, S., Gosselin, J., Cell Reports, 2017, 10.1016/j.celrep.2017.08.009
  • VEXOR: An integrative environment for prioritization of functional variants in fine-mapping analysis, Lemaçon, A., Beauparlant, C.J., Soucy, P., Allen, J., Easton, D., Kraft, P., Simard, J., Droit, A., Bioinformatics, 2017, 10.1093/bioinformatics/btw826
  • Analysis of the translatome in solid tumors using polyribosome profiling/RNA-Seq, Pauline Adjibade, Valerie Grenier St-Sauveur, Arnaud Droit, Edouard W. Khandjian, Paul Toren, Rachid Mazroui, Journal of Biological Methods, 2016, 10.14440/jbm.2016.151
  • A metabolic labeling approach for glycoproteomic analysis reveals altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells, Sheta, R., Woo, C.M., Roux-Dalvai, F., Fournier, F., Bourassa, S., Droit, A., Bertozzi, C.R., Bachvarov, D., Journal of Proteomics, 2016, 10.1016/j.jprot.2016.04.009
  • Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21, Hamdi, Y., Soucy, P., Adoue, V., Michailidou, K., Canisius, S., Lemaçon, A., Droit, A., Andrulis, I.L., Anton-Culver, H., Arndt, V., Baynes, C., Blomqvist, C., Bogdanova, N.V., Bojesen, S.E., Bolla, M.K., Bonanni, B., Borresen-Dale, A.-L., Brand, J.S., Brauch, H., Brenner, H., Broeks, A., Burwinkel, B., Chang-Claude, J., Couch, F.J., Cox, A., Cross, S.S., Czene, K., Darabi, H., Dennis, J., Devilee, P., Dörk, T., Dos-Santos-Silva, I., Eriksson, M., Fasching, P.A., Figueroa, J., Flyger, H., García-Closas, M., Giles, G.G., Goldberg, M.S., González-Neira, A., Grenaker-Alnæs, G., Guénel, P., Haeberle, L., Haiman, C.A., Hamann, U., Hallberg, E., Hooning, M.J., Hopper, J.L., Jakubowska, A., Jones, M., Kabisch, M., Kataja, V., Lambrechts, D., Le Marchand, L., Lindblom, A., Lubinski, J., Mannermaa, A., Maranian, M., Margolin, S., Marme, F., Milne, R.L., Neuhausen, S.L., Nevanlinna, H., Neven, P., Olswold, C., Peto, J., Plaseska-Karanfilska, D., Pylkäs, K., Radice, P., Rudolph, A., Sawyer, E.J., Schmidt, M.K., Shu, X.-O., Southey, M.C., Swerdlow, A., Tollenaar, R.A.E.M., Tomlinson, I., Torres, D., Truong, T., Vachon, C., Van Den Ouweland, A.M.W., Wang, Q., Winqvist, R., Zheng, W., Benitez, J., Chenevix-Trench, G., Dunning, A.M., Pharoah, P.D.P., Kristensen, V., Hall, P., Easton, D.F., Pastinen, T., Nord, S., Simard, J., Oncotarget, 2016, 10.18632/oncotarget.12818
  • Divergent Expression and Metabolic Functions of Human Glucuronosyltransferases through Alternative Splicing, Rouleau, M., Tourancheau, A., Girard-Bock, C., Villeneuve, L., Vaucher, J., Duperré, A.-M., Audet-Delage, Y., Gilbert, I., Popa, I., Droit, A., Guillemette, C., Cell Reports, 2016, 10.1016/j.celrep.2016.08.077
  • Effects of long-term serial passaging on the characteristics and properties of cell lines derived from uveal melanoma primary tumors, Mouriaux, F., Zaniolo, K., Bergeron, M.-A., Weidmann, C., De La Fouchardière, A., Fournier, F., Droit, A., Morcos, M.W., Landreville, S., Guérin, S.L., Investigative Ophthalmology and Visual Science, 2016, 10.1167/iovs.16-19317
  • Fine scale mapping of the 17q22 breast cancer locus using dense SNPs, genotyped within the Collaborative Oncological Gene-Environment Study (COGs), Darabi, H., Beesley, J., Droit, A., Kar, S., Nord, S., Marjaneh, M.M., Soucy, P., Michailidou, K., Ghoussaini, M., Wahl, H.F., Bolla, M.K., Wang, Q., Dennis, J., Alonso, M.R., Andrulis, I.L., Anton-Culver, H., Arndt, V., Beckmann, M.W., Benitez, J., Bogdanova, N.V., Bojesen, S.E., Brauch, H., Brenner, H., Broeks, A., Brüning, T., Burwinkel, B., Chang-Claude, J., Choi, J.-Y., Conroy, D.M., Couch, F.J., Cox, A., Cross, S.S., Czene, K., Devilee, P., Dörk, T., Easton, D.F., Fasching, P.A., Figueroa, J., Fletcher, O., Flyger, H., Galle, E., García-Closas, M., Giles, G.G., Goldberg, M.S., González-Neira, A., Guénel, P., Haiman, C.A., Hallberg, E., Hamann, U., Hartman, M., Hollestelle, A., Hopper, J.L., Ito, H., Jakubowska, A., Johnson, N., Kang, D., Khan, S., Kosma, V.-M., Kriege, M., Kristensen, V., Lambrechts, D., Le Marchand, L., Lee, S.C., Lindblom, A., Lophatananon, A., Lubinski, J., Mannermaa, A., Manoukian, S., Margolin, S., Matsuo, K., Mayes, R., McKay, J., Meindl, A., Milne, R.L., Muir, K., Neuhausen, S.L., Nevanlinna, H., Olswold, C., Orr, N., Peterlongo, P., Pita, G., Pylkäs, K., Rudolph, A., Sangrajrang, S., Sawyer, E.J., Schmidt, M.K., Schmutzler, R.K., Seynaeve, C., Shah, M., Shen, C.-Y., Shu, X.-O., Southey, M.C., Stram, D.O., Surowy, H., Swerdlow, A., Teo, S.H., Tessier, D.C., Tomlinson, I., Torres, D., Truong, T., Vachon, C.M., Vincent, D., Winqvist, R., Wu, A.H., Wu, P.-E., Yip, C.H., Zheng, W., Pharoah, P.D.P., Hall, P., Edwards, S.L., Simard, J., French, J.D., Chenevix-Trench, G., Dunning, A.M., Scientific Reports, 2016, 10.1038/srep32512
  • Fine-scale mapping of 8q24 locus identifies multiple independent risk variants for breast cancer, Shi, J., Zhang, Y., Zheng, W., Michailidou, K., Ghoussaini, M., Bolla, M.K., Wang, Q., Dennis, J., Lush, M., Milne, R.L., Shu, X.-O., Beesley, J., Kar, S., Andrulis, I.L., Anton-Culver, H., Arndt, V., Beckmann, M.W., Zhao, Z., Guo, X., Benitez, J., Beeghly-Fadiel, A., Blot, W., Bogdanova, N.V., Bojesen, S.E., Brauch, H., Brenner, H., Brinton, L., Broeks, A., Brüning, T., Burwinkel, B., Cai, H., Canisius, S., Chang-Claude, J., Choi, J.-Y., Couch, F.J., Cox, A., Cross, S.S., Czene, K., Darabi, H., Devilee, P., Droit, A., Dork, T., Fasching, P.A., Fletcher, O., Flyger, H., Fostira, F., Gaborieau, V., García-Closas, M., Giles, G.G., Grip, M., Guenel, P., Haiman, C.A., Hamann, U., Hartman, M., Miao, H., Hollestelle, A., Hopper, J.L., Hsiung, C.-N., Ito, H., Jakubowska, A., Johnson, N., Torres, D., Kabisch, M., Kang, D., Khan, S., Knight, J.A., Kosma, V.-M., Lambrechts, D., Li, J., Lindblom, A., Lophatananon, A., Lubinski, J., Mannermaa, A., Manoukian, S., Le Marchand, L., Margolin, S., Marme, F., Matsuo, K., McLean, C., Meindl, A., Muir, K., Neuhausen, S.L., Nevanlinna, H., Nord, S., Børresen-Dale, A.-L., Olson, J.E., Orr, N., van den Ouweland, A.M.W., Peterlongo, P., Choudary Putti, T., Rudolph, A., Sangrajrang, S., Sawyer, E.J., Schmidt, M.K., Schmutzler, R.K., Shen, C.-Y., Hou, M.-F., Shrubsole, M.J., Southey, M.C., Swerdlow, A., Hwang Teo, S., Thienpont, B., Toland, A.E., Tollenaar, R.A.E.M., Tomlinson, I., Truong, T., Tseng, C.-C., Wen, W., Winqvist, R., Wu, A.H., Har Yip, C., Zamora, P.M., Zheng, Y., Floris, G., Cheng, C.-Y., Hooning, M.J., Martens, J.W.M., Seynaeve, C., Kristensen, V.N., Hall, P., Pharoah, P.D.P., Simard, J., Chenevix-Trench, G., Dunning, A.M., Antoniou, A.C., Easton, D.F., Cai, Q., Long, J., International Journal of Cancer, 2016, 10.1002/ijc.30150
  • FOXA and master transcription factors recruit Mediator and Cohesin to the core transcriptional regulatory circuitry of cancer cells, Fournier, M., Bourriquen, G., Lamaze, F.C., Côté, M.C., Fournier, É., Joly-Beauparlant, C., Caron, V., Gobeil, S., Droit, A., Bilodeau, S., Scientific Reports, 2016, 10.1038/srep34962
  • Identification of independent association signals and putative functional variants for breast cancer risk through fine-scale mapping of the 12p11 locus, Zeng, C., Guo, X., Long, J., Kuchenbaecker, K.B., Droit, A., Michailidou, K., Ghoussaini, M., Kar, S., Freeman, A., Hopper, J.L., Milne, R.L., Bolla, M.K., Wang, Q., Dennis, J., Agata, S., Ahmed, S., Aittomäki, K., Andrulis, I.L., Anton-Culver, H., Antonenkova, N.N., Arason, A., Arndt, V., Arun, B.K., Arver, B., Bacot, F., Barrowdale, D., Baynes, C., Beeghly-Fadiel, A., Benitez, J., Bermisheva, M., Blomqvist, C., Blot, W.J., Bogdanova, N.V., Bojesen, S.E., Bonanni, B., Borresen-Dale, A.-L., Brand, J.S., Brauch, H., Brennan, P., Brenner, H., Broeks, A., Brüning, T., Burwinkel, B., Buys, S.S., Cai, Q., Caldes, T., Campbell, I., Carpenter, J., Chang-Claude, J., Choi, J.-Y., Claes, K.B.M., Clarke, C., Cox, A., Cross, S.S., Czene, K., Daly, M.B., de la Hoya, M., De Leeneer, K., Devilee, P., Diez, O., Domchek, S.M., Doody, M., Dorfling, C.M., Dörk, T., dos-Santos-Silva, I., Dumont, M., Dwek, M., Dworniczak, B., Egan, K., Eilber, U., Einbeigi, Z., Ejlertsen, B., Ellis, S., Frost, D., Lalloo, F., Fasching, P.A., Figueroa, J., Flyger, H., Friedlander, M., Friedman, E., Gambino, G., Gao, Y.-T., Garber, J., García-Closas, M., Gehrig, A., Damiola, F., Lesueur, F., Mazoyer, S., Stoppa-Lyonnet, D., Giles, G.G., Godwin, A.K., Goldgar, D.E., González-Neira, A., Greene, M.H., Guénel, P., Haeberle, L., Haiman, C.A., Hallberg, E., Hamann, U., Hansen, T.V.O., Hart, S., Hartikainen, J.M., Hartman, M., Hassan, N., Healey, S., Hogervorst, F.B.L., Verhoef, S., Hendricks, C.B., Hillemanns, P., Hollestelle, A., Hulick, P.J., Hunter, D.J., Imyanitov, E.N., Isaacs, C., Ito, H., Jakubowska, A., Janavicius, R., Jaworska-Bieniek, K., Jensen, U.B., John, E.M., Joly Beauparlant, C., Jones, M., Kabisch, M., Kang, D., Karlan, B.Y., Kauppila, S., Kerin, M.J., Khan, S., Khusnutdinova, E., Knight, J.A., Konstantopoulou, I., Kraft, P., Kwong, A., Laitman, Y., Lambrechts, D., Lazaro, C., Le Marchand, L., Lee, C.N., Lee, M.H., Lester, J., Li, J., Liljegren, A., Lindblom, A., Lophatananon, A., Lubinski, J., Mai, P.L., Mannermaa, A., Manoukian, S., Margolin, S., Marme, F., Matsuo, K., McGuffog, L., Meindl, A., Menegaux, F., Montagna, M., Muir, K., Mulligan, A.M., Nathanson, K.L., Neuhausen, S.L., Nevanlinna, H., Newcomb, P.A., Nord, S., Nussbaum, R.L., Offit, K., Olah, E., Olopade, O.I., Olswold, C., Osorio, A., Papi, L., Park-Simon, T.-W., Paulsson-Karlsson, Y., Peeters, S., Peissel, B., Peterlongo, P., Peto, J., Pfeiler, G., Phelan, C.M., Presneau, N., Radice, P., Rahman, N., Ramus, S.J., Rashid, M.U., Rennert, G., Rhiem, K., Rudolph, A., Salani, R., Sangrajrang, S., Sawyer, E.J., Schmidt, M.K., Schmutzler, R.K., Schoemaker, M.J., Schürmann, P., Seynaeve, C., Shen, C.-Y., Shrubsole, M.J., Shu, X.-O., Sigurdson, A., Singer, C.F., Slager, S., Soucy, P., Southey, M., Steinemann, D., Swerdlow, A., Szabo, C.I., Tchatchou, S., Teixeira, M.R., Teo, S.H., Terry, M.B., Tessier, D.C., Teulé, A., Thomassen, M., Tihomirova, L., Tischkowitz, M., Toland, A.E., Tung, N., Turnbull, C., van den Ouweland, A.M.W., van Rensburg, E.J., ven den Berg, D., Vijai, J., Wang-Gohrke, S., Weitzel, J.N., Whittemore, A.S., Winqvist, R., Wong, T.Y., Wu, A.H., Yannoukakos, D., Yu, J.-C., Pharoah, P.D.P., Hall, P., Chenevix-Trench, G., Dunning, A.M., Simard, J., Couch, F.J., Antoniou, A.C., Easton, D.F., Zheng, W., Breast Cancer Research, 2016, 10.1186/s13058-016-0718-0
  • iTRAQ-based quantitative proteomics of stratum corneum of dandruff scalp reveals new insights into its aetiology and similarities with atopic dermatitis, Cavusoglu, N., Delattre, C., Donovan, M., Bourassa, S., Droit, A., El Rawadi, C., Jourdain, R., Bernard, D., Archives of Dermatological Research, 2016, 10.1007/s00403-016-1681-4
  • metagene Profiles Analyses Reveal Regulatory Element’s Factor-Specific Recruitment Patterns, Joly Beauparlant, C., Lamaze, F.C., Deschênes, A., Samb, R., Lemaçon, A., Belleau, P., Bilodeau, S., Droit, A., PLoS Computational Biology, 2016, 10.1371/journal.pcbi.1004751
  • MicroRNA-132/212 deficiency enhances Aβ production and senile plaque deposition in Alzheimer's disease triple transgenic mice, Hernandez-Rapp, J., Rainone, S., Goupil, C., Dorval, V., Smith, P.Y., Saint-Pierre, M., Vallée, M., Planel, E., Droit, A., Calon, F., Cicchetti, F., Hébert, S.S., Scientific Reports, 2016, 10.1038/srep30953
  • Neutrophil-derived exosomes: A new mechanism contributing to airway smooth muscle remodeling, Vargas, A., Roux-Dalvai, F., Droit, A., Lavoie, J.-P., American Journal of Respiratory Cell and Molecular Biology, 2016, 10.1165/rcmb.2016-0033OC
  • Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells, Sheta, R., Roux-Dalvai, F., Woo, C.M., Fournier, F., Bourassa, S., Bertozzi, C.R., Droit, A., Bachvarov, D., Data in Brief, 2016, 10.1016/j.dib.2016.05.060
  • RNA expression profile of calcified bicuspid, tricuspid, and normal human aortic valves by RNA sequencing, Guauque-Olarte, S., Droit, A., Tremblay-Marchand, J., Gaudreault, N., Kalavrouziotis, D., Dagenais, F., Seidman, J.G., Body, S.C., Pibarot, P., Mathieu, P., Bossé, Y., Physiological Genomics, 2016, 10.1152/physiolgenomics.00041.2016
  • Selective and sensitive quantification of the cytochrome P450 3A4 protein in human liver homogenates through multiple reaction monitoring mass spectrometry, Cieślak, A., Kelly, I., Trottier, J., Verreault, M., Wunsch, E., Milkiewicz, P., Poirier, G., Droit, A., Barbier, O., Proteomics, 2016, 10.1002/pmic.201500386
  • Unravelling the transcriptomic landscape of the major phase II UDP-glucuronosyltransferase drug metabolizing pathway using targeted RNA sequencing, Tourancheau, A., Margaillan, G., Rouleau, M., Gilbert, I., Villeneuve, L., Lévesque, E., Droit, A., Guillemette, C., Pharmacogenomics Journal, 2016, 10.1038/tpj.2015.20
  • Calcium Signaling Pathway Genes RUNX2 and CACNA1C Are Associated with Calcific Aortic Valve Disease, Guauque-Olarte, S., Messika-Zeitoun, D., Droit, A., Lamontagne, M., Tremblay-Marchand, J., Lavoie-Charland, E., Gaudreault, N., Arsenault, B.J., Dube, M.-P., Tardif, J.-C., Body, S.C., Seidman, J.G., Boileau, C., Mathieu, P., Pibarot, P., Bosse, Y., Circulation: Cardiovascular Genetics, 2015, 10.1161/CIRCGENETICS.115.001145
  • Evaluation of iTRAQ and SWATH-MS for the quantification of proteins associated with insulin resistance in human duodenal biopsy samples, Bourassa, S., Fournier, F., Nehmé, B., Kelly, I., Tremblay, A., Lemelin, V., Lamarche, B., Couture, P., Droit, A., PLoS ONE, 2015, 10.1371/journal.pone.0125934
  • Fine-scale mapping of the 4q24 locus identifies & pr two Independent loci associated with breast cancer risk, Guo, X., Long, J., Zeng, C., Michailidou, K., Ghoussaini, M., Bolla, M.K., Wang, Q., Milne, R.L., Shu, X.-O., Cai, Q., Beesley, J., Kar, S.P., Andrulis, I.L., Anton-Culver, H., Arndt, V., Beckmann, M.W., Beeghly-Fadiel, A., Benitez, J., Blot, W., Bogdanova, N., Bojesen, S.E., Brauch, H., Brenner, H., Brinton, L., Broekss, A., Bruning, T., Burwinkel, B., Cai, H., Canisius, S., Chang-Claude, J., Choi, J.-Y., Couch, F.J., Cox, A., Cross, S.S., Czene, K., Darabi, H., Devilee, P., Droit, A., Dork, T., Fasching, P.A., Fletcher, O., Flyger, H., Fostira, F., Gaborieau, V., García-Closas, M., Giles, G.G., Grip, M., Guenel, P., Haiman, C.A., Hamann, U., Hartman, M., Hollestelle, A., Hopper, J.L., Hsiung, C.-N., Ito, H., Jakubowska, A., Johnson, N., Kabisch, M., Kang, D., Khan, S., Knight, J.A., Kosma, V.-M., Lambrechts, D., Le Marchand, L., Li, J., Lindblom, A., Lophatananon, A., Lubinski, J., Mannermaa, A., Manoukian, S., Margolin, S., Marme, F., Matsuo, K., McLean, C.A., Meindl, A., Muir, K., Neuhausen, S.L., Nevanlinna, H., Nord, S., Olson, J.E., Orr, N., Peterlongo, P., Putti, T.C., Rudolph, A., Sangrajrang, S., Sawyer, E.J., Schmidt, M.K., Schmutzler, R.K., Shen, C.-Y., Shi, J., Shrubsole, M.J., Southey, M.C., Swerdlow, A., Teo, S.H., Thienpont, B., Toland, A.E., Tollenaar, R.A.E.M., Tomlinson, I.P.M., Truong, T., Tseng, C.-C., Van Den Ouweland, A., Wen, W., Winqvist, R., Wu, A., Yip, C.H., Zamora, M.P., Zheng, Y., Hall, P., Pharoah, P.D.P., Simard, J., Chenevix-Trench, G., Dunning, A.M., Easton, D.F., Zheng, W., Eeles, R.A., Al Olama, A.A., Kote-Jarai, Z., Benlloch, S., Antoniou, A., McGuffog, L., Offit, K., Lee, A., Dicks, E., Luccarini, C., Tessier, D.C., Bacot, F., Vincent, D., La Boissière, S., Robidoux, F., Nielsen, S.F., Cunningham, J.M., Windebank, S.A., Hilker, C.A., Meyer, J., Angelakos, M., Maskiell, J., Van Der Schoot, E., Rutgers, E., Verhoef, S., Hogervorst, F., Boonyawongviroj, P., Siriwanarungsan, P., Schrauder, M., Rübner, M., Oeser, S., Landrith, S., Williams, E., Ryder-Mills, E., Sargus, K., McInerney, N., Colleran, G., Rowan, A., Jones, A., Sohn, C., Schneeweiß, A., Bugert, P., Álvarez, N., Bernstein, L., Lacey, J., Wang, S., Ma, H., Lu, Y., Clague De Hart, J., Deapen, D., Pinder, R., Lee, E., Schumacher, F., Horn-Ross, P., Reynolds, P., Nelson, D., Park, H., Ziegler, H., Wolf, S., Hermann, V., Lo, W.-Y., Justenhoven, C., Ko, Y.-D., Baisch, C., Fischer, H.-P., Pesch, B., Rabstein, S., Lotz, A., Harth, V., Heikkinen, T., Erkkilä, I., Aaltonen, K., Von Smitten, K., Antonenkova, N., Hillemanns, P., Christiansen, H., Myöhänen, E., Kemiläinen, H., Thorne, H., Niedermayr, E., Bowtell, D., De Fazio, A., Gertig, D., Green, A., Webb, P., Green, A., Parsons, P., Hayward, N., Whiteman, D., Fung, A., Yashiki, J., Peuteman, G., Smeets, D., Van Brussel, T., Corthouts, K., Obi, N., Heinz, J., Behrens, S., Eilber, U., Celik, M., Olchers, T., Peissel, B., Scuvera, G., Zaffaroni, D., Bonanni, B., Feroce, I., Maniscalco, A., Rossi, A., Bernard, L., Tranchant, M., Valois, M.-F., Turgeon, A., Heguy, L., Yee, P.S., Kang, P., Nee, K.I., Mariapun, S., Sook-Yee, Y., Lee, D., Ching, T.Y., Taib, N.A.M., Otsukka, M., Mononen, K., Selander, T., Weerasooriya, N., Krol-Warmerdam, E., Molenaar, J., Blom, J., Szeszenia-Dabrowska, N., Peplonska, B., Zatonski, W., Chao, P., Stagner, M., Bos, P., Crepin, E., Nieuwlaat, A., Heemskerk, A., Higham, S., Cramp, H., Connley, D., Balasubramanian, S., Brock, I., Kerin, M., Miller, N., Kerbrat, P., Arveux, P., Le Scodan, R., Raoul, Y., Laurent-Puig, P., Mulot, C., Stegmaier, C., Butterbach, K., Karstens, J.H., Flesch-Janys, D., Seibold, P., Vrieling, A., Nickels, S., Radice, P., Pylkäs, K., Jukkola-Vuorinen, A., Kauppila, S., Conroy, D., Baynes, C., Chua, K., Pilarski, R., Cancer Epidemiology Biomarkers and Prevention, 2015, 10.1158/1055-9965.EPI-15-0363
  • Implementation and Evaluation of a Wiki Involving Multiple Stakeholders Including Patients in the Promotion of Best Practices in Trauma Care: The WikiTrauma, , JMIR Research Protocols, 2015, 10.2196/resprot.4024
  • Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs, Gagné, J.-P., Ethier, C., Defoy, D., Bourassa, S., Langelier, M.-F., Riccio, A.A., Pascal, J.M., Moon, K.-M., Foster, L.J., Ning, Z., Figeys, D., Droit, A., Poirier, G.G., DNA Repair, 2015, 10.1016/j.dnarep.2015.02.004
  • Skeletal muscle proteomic signature and metabolic impairment in pulmonary hypertension, Malenfant, S., Potus, F., Fournier, F., Breuils-Bonnet, S., Pflieger, A., Bourassa, S., Tremblay, È., Nehmé, B., Droit, A., Bonnet, S., Provencher, S., Journal of Molecular Medicine, 2015, 10.1007/s00109-014-1244-0
  • Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling, Samb, R., Khadraoui, K., Belleau, P., Deschênes, A., Lakhal-Chaieb, L., Droit, A., Statistical Applications in Genetics and Molecular Biology, 2015, 10.1515/sagmb-2014-0098
  • Bio2RDF release 3: A larger connected network of linked data for the life sciences, Dumontier, M., Callahan, A., Cruz-Toledo, J., Ansell, P., Emonet, V., Belleau, F., Droit, A., CEUR Workshop Proceedings, 2014
  • Effect of an isoenergetic traditional mediterranean diet on the high-density lipoprotein proteome in men with the metabolic syndrome, Richard, C., Couture, P., Desroches, S., Nehmé, B., Bourassa, S., Droit, A., Lamarche, B., Journal of Nutrigenetics and Nutrigenomics, 2014, 10.1159/000363137
  • Effect of sitagliptin therapy on triglyceride-rich lipoprotein kinetics in patients with type 2 diabetes, Tremblay, A.J., Lamarche, B., Kelly, I., Charest, A., Lépine, M.-C., Droit, A., Couture, P., Diabetes, Obesity and Metabolism, 2014, 10.1111/dom.12359
  • Establishment of a comprehensive reference transcriptome for vertebral bone tissue to study the impacts of nutritional phosphorus deficiency in rainbow trout (Oncorhynchus mykiss, Walbaum), Le Luyer, J., Deschamps, M.-H., Proulx, E., Poirier Stewart, N., Joly Beauparlant, C., Droit, A., Robert, C., Vandenberg, G.W., Marine Genomics, 2014, 10.1016/j.margen.2014.10.002
  • Investigation of male infertility using quantitative comparative proteomics, Légaré, C., Droit, A., Fournier, F., Bourassa, S., Force, A., Cloutier, F., Tremblay, R., Sullivan, R., Journal of Proteome Research, 2014, 10.1021/pr501031x
  • Key intestinal genes involved in lipoprotein metabolism are downregulated in dyslipidemic men with insulin resistance, Couture, P., Tremblay, A.J., Kelly, I., Lemelin, V., Droit, A., Lamarche, B., Journal of Lipid Research, 2014, 10.1194/jlr.M040071
  • Quantitative proteomic analysis of amphotericin B resistance in Leishmania infantum, Brotherton, M.-C., Bourassa, S., Légaré, D., Poirier, G.G., Droit, A., Ouellette, M., International Journal for Parasitology: Drugs and Drug Resistance, 2014, 10.1016/j.ijpddr.2014.05.002
  • RTANDEM, an R/Bioconductor package for MS/MS protein identification, Fournier, F., Joly Beauparlant, C., Paradis, R., Droit, A., Bioinformatics, 2014, 10.1093/bioinformatics/btu178
  • Integration of high-resolution methylome and transcriptome analyses to dissect epigenomic changes in childhood acute lymphoblastic leukemia, Busche, S., Ge, B., Vidal, R., Spinella, J.-F., Saillour, V., Richer, C., Healy, J., Chen, S.-H., Droit, A., Sinnett, D., Pastinen, T., Cancer Research, 2013, 10.1158/0008-5472.CAN-12-4367
  • NGS++: A library for rapid prototyping of epigenomics software tools, Markovits, A.N., Beauparlant, C.J., Toupin, D., Wang, S., Droit, A., Gevry, N., Bioinformatics, 2013, 10.1093/bioinformatics/btt312
  • Proteomic and genomic analyses of antimony resistant Leishmania infantum mutant, Brotherton, M.-C., Bourassa, S., Leprohon, P., Légaré, D., Poirier, G.G., Droit, A., Ouellette, M., PLoS ONE, 2013, 10.1371/journal.pone.0081899
  • An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChiP-Seq, Mercier, E., Droit, A., Li, L., Robertson, G., Zhang, X., Gottardo, R., PLoS ONE, 2011, 10.1371/journal.pone.0016432
  • PICS: Probabilistic Inference for ChIP-seq, Zhang, X., Robertson, G., Krzywinski, M., Ning, K., Droit, A., Jones, S., Gottardo, R., Biometrics, 2011, 10.1111/j.1541-0420.2010.01441.x
  • rMAT - An R/Bioconductor package for analyzing ChIP-chip experiments, Droit, A., Cheung, C., Gottardo, R., Bioinformatics, 2010, 10.1093/bioinformatics/btq023
  • Proteomic investigation of phosphorylation sites in poly(ADP-ribose) polymerase-1 and poly(ADP-ribose) glycohydrolase, Gagné, J.-P., Moreel, X., Gagné, P., Labelle, Y., Droit, A., Chevalier-Paré, M., Bourassa, S., McDonald, D., Hendzel, M.J., Prigent, C., Poirier, G.G., Journal of Proteome Research, 2009, 10.1021/pr800810n
  • Human Proteinpedia enables sharing of human protein data [4], Mathivanan, S., Ahmed, M., Ahn, N.G., Alexandre, H., Amanchy, R., Andrews, P.C., Bader, J.S., Balgley, B.M., Bantscheff, M., Bennett, K.L., Björling, E., Blagoev, B., Bose, R., Brahmachari, S.K., Burlingame, A.S., Bustelo, X.R., Cagney, G., Cantin, G.T., Cardasis, H.L., Celis, J.E., Chaerkady, R., Chu, F., Cole, P.A., Costello, C.E., Cotter, R.J., Crockett, D., DeLany, J.P., De Marzo, A.M., DeSouza, L.V., Deutsch, E.W., Dransfield, E., Drewes, G., Droit, A., Dunn, M.J., Elenitoba-Johnson, K., Ewing, R.M., Eyk, J.V., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagné, P., Gelfi, C., Gevaert, K., Gimble, J.M., Gnad, F., Goel, R., Gromov, P., Hanash, S.M., Hancock, W.S., Harsha, H.C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjernø, K., Hochstrasser, D.F., Hofmann, O., Horn, D.M., Hruban, R.H., Ibarrola, N., James, P., Jensen, O.N., Jensen, P.H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R.F., Korf, U., Körner, R., Kuster, B., Kwon, M.-S., Lee, H.-J., Lee, Y.-J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Levander, F., Lim, M.S., Löbke, C., Loo, J.A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C.A., Mischak, H., Mohan, S.S., Mohmood, R., Molina, H., Moran, M.F., Morgan, J.D., Moritz, R., Morzel, M., Muddiman, D.C., Nalli, A., Navarro, J.D., Neubert, T.A., Ohara, O., Oliva, R., Omenn, G.S., Oyama, M., Paik, Y.-K., Pennington, K., Pepperkok, R., Periaswamy, B., Petricoin, E.F., Poirier, G.G., Prasad, T.S.K., Purvine, S.O., Rahiman, B.A., Ramachandran, P., Ramachandra, Y.L., Rice, R.H., Rick, J., Ronnholm, R.H., Salonen, J., Sanchez, J.-C., Sayd, T., Seshi, B., Shankari, K., Sheng, S.J., Shetty, V., Shivakumar, K., Simpson, R.J., Sirdeshmukh, R., Michael Siu, K.W., Smith, J.C., Smith, R.D., States, D.J., Sugano, S., Sullivan, M., Superti-Furga, G., Takatalo, M., Thongboonkerd, V., Trinidad, J.C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T.D., Vidal-Taboada, J.-M., Vihinen, M., Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J.R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P., Pandey, A., Nature Biotechnology, 2008, 10.1038/nbt0208-164
  • Quality assessment of peptide tandem mass spectra, Wu, F.-X., Gagné, P., Droit, A., Poirier, G.G., BMC Bioinformatics, 2008, 10.1186/1471-2105-9-S6-S13
  • Comparative proteome analysis of human epithelial ovarian cancer, Gagné, J.-P., Éthier, C., Gagné, P., Mercier, G., Bonicalzi, M.-E., Mes-Masson, A.-M., Droit, A., Winstall, E., Isabelle, M., Poirier, G.G., Proteome Science, 2007, 10.1186/1477-5956-5-16
  • PARP-3 associates with polycomb group bodies and with components of the DNA damage repair machinery, Rouleau, M., McDonald, D., Gagné, P., Ouellet, M.-E., Droit, A., Hunter, J.M., Dutertre, S., Prigent, C., Hendzel, M.J., Poirier, G.G., Journal of Cellular Biochemistry, 2007, 10.1002/jcb.21051
  • PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system, Droit, A., Hunter, J.M., Rouleau, M., Ethier, C., Picard-Cloutier, A., Bourgais, D., Poirier, G.G., BMC Bioinformatics, 2007, 10.1186/1471-2105-8-483
  • Bioinformatic standards for proteomics-oriented mass spectrometry, Droit, A., Fillon, J., Morissette, J., Poirier, G.G., Current Proteomics, 2006, 10.2174/157016406778194617
  • Quality assessment of peptide tandem mass spectra, Wu, F.-X., Gagné, P., Droit, A., Poirier, G.G., First International Multi- Symposiums on Computer and Computational Sciences, IMSCCS'06, 2006, 10.1109/IMSCCS.2006.109
  • RT-PSM, a real-time program for peptide-spectrum matching with statistical significance, Wu, F.-X., Gagné, P., Droit, A., Poirier, G.G., Rapid Communications in Mass Spectrometry, 2006, 10.1002/rcm.2435
  • The expanding role of poly(ADP-ribose) metabolism: Current challenges and new perspectives, Gagné, J.-P., Hendzel, M.J., Droit, A., Poirier, G.G., Current Opinion in Cell Biology, 2006, 10.1016/j.ceb.2006.02.013
  • Experimental and bioinformatic approaches for interrogating protein-protein interactions to determine protein function, Droit, A., Poirier, G.G., Hunter, J.M., Journal of Molecular Endocrinology, 2005, 10.1677/jme.1.01693
  • Proteome profiling of human epithelial ovarian cancer cell line TOV-112D, Gagné, J.-P., Gagné, P., Hunter, J.M., Bonicalzi, M.-È., Lemay, J.-F., Kelly, I., Le Page, C., Provencher, D., Mes-Masson, A.-M., Droit, A., Bourgais, D., Poirier, G.G., Molecular and Cellular Biochemistry, 2005, 10.1007/s11010-005-7556-1
  • Regulation of poly(ADP-ribose) metabolism by poly(ADP-ribose) glycohydrolase: Where and when?, Bonicalzi, M.-E., Haince, J.-F., Droit, A., Poirier, G.G., Cellular and Molecular Life Sciences, 2005, 10.1007/s00018-004-4505-1

Contribution à l'enseignement aux cycles supérieurs

Étudiant(e)s dirigé(e)s*

Depuis 2009
  • Alexandra Carrier - Doctorat - En cours
  • Khawla Seddiki - Doctorat - En cours
  • Kodjovi Dodji Mlaga - Post-doctorat - En cours
  • Camille Cassandre Illiano - Doctorat - En cours
  • Virgile Raufaste-Cazavieille - Doctorat - En cours
  • Elloise Coyle - Doctorat - En cours
  • Sophiane Bouirdene - Doctorat - En cours
  • Antoine Lacombe - Maitrîse avec mémoire - En cours
  • Elsa Claude - Doctorat - En cours
  • Vivian Robin - Doctorat - En cours
  • Louis Ohl - Doctorat - En cours
  • Steven Boutrais - Doctorat - En cours
  • Paul-Emmanuel Edeline - Doctorat - En cours
  • Mélissande Nagati - Post-doctorat - En cours
  • Milan Picard - Doctorat - En cours
  • El Hadji Ousseynou Accrachi - Doctorat - En cours
  • Andréanne Gagné - Doctorat - En cours
  • Loïc Mangnier - Doctorat - En cours
  • Simon Gotty - Maitrîse avec mémoire - En cours
  • Tania Isabelle Lalia Cuppens - Post-doctorat - En cours
  • Jean-Paul Navailles - Doctorat - En cours
  • Olivia Gavard - Doctorat - En cours
  • Samarth Thonta Setty - Post-doctorat - En cours
  • Alan Tourancheau - Doctorat - 2016/01
  • Jean-Sébastien Milanese - Maitrîse avec mémoire - 2017/09
  • Audrey Lemaçon - Doctorat - 2019/01
  • Benjamin Vittrant - Doctorat - 2021/01
  • Louis Cossus - Doctorat - 2021/05
  • Antoine Bodein - Doctorat - 2021/05
  • Roxanne Sergerie - Maitrîse avec mémoire - 2022/01
  • Régis Ongaro-Carcy - Doctorat - 2022/05

Encadrement d'étudiant(e)s pour les programmes suivants :

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*Les supervisions d’étudiant(e)s de 1er cycle en stage de recherche et de résident(e)s aux études médicales postdoctorales seront répertoriées ultérieurement.

Direction et personnes-ressources

Vice-décanat à la recherche et aux études supérieures
Pavillon Ferdinand-Vandry
Université Laval
1050, avenue de la Médecine, local 4645
Québec (Québec) G1V 0A6
Canada

Renseignements - Secrétariat
418 656-2690
vdres@fmed.ulaval.ca

Jacques Simard
Vice-doyen à la recherche et aux études supérieures
vice-doyen.recherche-et-etudes-superieures@fmed.ulaval.ca

Louise Laperrière
Adjointe au vice-doyen à la recherche et aux études supérieures
louise.laperriere@fmed.ulaval.ca 

Volet recherche
Gestion financière
Volet études aux cycles supérieurs